If you use CRISPRscan, please cite:
CRISPRscan: Designing highly efficient sgRNAs for CRISPR/Cas9 targeting in vivo
Miguel A. Moreno-Mateos*, Charles E. Vejnar*, Jean-Denis Beaudoin, Juan P. Fernandez, Emily K. Mis, Mustafa K. Khokha and Antonio J. Giraldez
*Equal contribution
Nature Methods 2015
doi:10.1038/nmeth.3543
If you use off-target CFD score, please cite:
Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation.
John G. Doench, Ella Hartenian, Daniel B. Graham, Zuzana Tothova, Mudra Hegde, Ian Smith, Meagan Sullender, Benjamin L. Ebert, Ramnik J. Xavier, and David E. Root
Nature Biotechnology 2014
doi:10.1038/nbt.3026
If you use any protein domain annotation imported from Ensembl, please cite:
| Method | Publication |
|---|---|
| HMM-Panther | Mi et al (10.1093/nar/gkw1138) |
| Pfam | Bateman et al (10.1093/nar/gkh121) |
| PIR | Barker et al (10.1002/047001153X.g306302) |
| CDD | Marchler-Bauer et al (10.1093/nar/gkw1129) |
| Gene3D | Lewis et al (10.1093/nar/gkx1069) |
| PROSITE profiles | Sigrist et al (10.1093/nar/gks1067) |
| PROSITE patterns | Sigrist et al (10.1093/nar/gks1067) |
| SuperFamily | Gough et al (10.1006/jmbi.2001.5080) |
| SMART | Letunic et al (10.1093/nar/gkj079) |
| PRINTS | Attwood et al (10.1093/nar/gkg030) |
| TIGRFAM | Haft et al (10.1093/nar/gkg128) |
| HAMAP | Pedruzzi et al (10.1093/nar/gku1002) |
| Structure-Function Linkage DB | Akiva et al (10.1093/nar/gkt1130) |
| NCBIfam | Lu et al (doi: 10.1093/nar/gkz991) |